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RTMet 0.1 documentation
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Table of Contents

  • Getting Started
    • Installation
    • Basic Tutorial
    • Configuring the workflow
  • User Guide
    • Controlling the workflow using Cylc GUI, TUI and CLI
    • Visualizing results with InfluxDB
    • Automating bioreactor sampling and analysis
    • Automating file transfers from the spectrometer
    • How to set up real-time monitoring
  • Reference
    • Workflow User Configuration
    • Results tables
    • Bioinformatics tasks
  • Development
    • Workflow design choices
    • Coding style
    • Adding a task to the workflow
    • Adding an item to user configuration
  • Glossary
  • Contributing
  • License
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Getting Started¶

  • Installation
    • System requirements
    • Installing the workflow
    • Optional: Installing InfluxDB
  • Basic Tutorial
    • Creating a workflow run
    • Processing .raw files
    • Viewing results
    • Deleting the workflow run
  • Configuring the workflow
    • Editing the user config
    • Additional input data configuration
    • Processing data with the modified configuration
    • Changing the config at runtime
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