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RTMet 0.1 documentation
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Table of Contents

  • Getting Started
    • Installation
    • Basic Tutorial
    • Configuring the workflow
  • User Guide
    • Controlling the workflow using Cylc GUI, TUI and CLI
    • Visualizing results with InfluxDB
    • Automating bioreactor sampling and analysis
    • Automating file transfers from the spectrometer
    • How to set up real-time monitoring
  • Reference
    • Workflow User Configuration
    • Results tables
    • Bioinformatics tasks
  • Development
    • Workflow design choices
    • Coding style
    • Adding a task to the workflow
    • Adding an item to user configuration
  • Glossary
  • Contributing
  • License
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How to set up real-time monitoring¶

In this guide, we’ll integrate everything we’ve learned, in order to have automated installation of workflow runs, ingestion of .raw files, and a dashboard that is updated in real-time.

Pre-requisites:

  • Configuring the workflow

  • Visualizing results with InfluxDB

  • Automating bioreactor sampling and analysis

  • Automating file transfers from the spectrometer

Attention

🏗 Work in Progress 🏗

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Automating file transfers from the spectrometer
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