User Guide

• Controlling the workflow using Cylc GUI, TUI and CLI
  • Cylc GUI
  • Cylc TUI
  • Cylc CLI
• Visualizing results with InfluxDB
  • Linking the workflow to the database
  • Uploading data to InfluxDB
  • Setting up the bioreactor dashboard
• Automating bioreactor sampling and analysis
  • “On-line untargeted metabolomics monitoring of an Escherichia coli succinate fermentation process”
  • “On-line targeted metabolomics for real-time monitoring of relevant compounds in fermentation processes”
• Automating file transfers from the spectrometer
  • Changing the input strategy in workflow configuration
  • Approaches for synchronized file access
• How to set up real-time monitoring